An object of class Seurat 46265 features across 49146 samples within 2 assays Active assay: SCT (18998 features) 1 other assay present: RNA 3 dimensional reductions calculated: pca, umap, tsne
The Seurat object was generated with Seurat 3.1.4.
## R version 3.6.3 (2020-02-29)
## Platform: x86_64-apple-darwin18.7.0 (64-bit)
## Running under: macOS Mojave 10.14.6
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /usr/local/Cellar/openblas/0.3.9/lib/libopenblasp-r0.3.9.dylib
##
## locale:
## [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.9.2.1 knitr_1.28 dplyr_0.8.5 rmarkdown_2.1 Seurat_3.1.0 ggplot2_3.3.0 shiny_1.4.0.2
##
## loaded via a namespace (and not attached):
## [1] TH.data_1.0-10 Rtsne_0.15 colorspace_1.4-1 ellipsis_0.3.0 ggridges_0.5.2 rstudioapi_0.11 farver_2.0.3 leiden_0.3.3
## [9] listenv_0.8.0 npsurv_0.4-0.1 ggrepel_0.8.2 mvtnorm_1.1-0 codetools_0.2-16 splines_3.6.3 R.methodsS3_1.8.0 mnormt_1.5-7
## [17] lsei_1.2-0.1 TFisher_0.2.0 jsonlite_1.6.1 ica_1.0-2 cluster_2.1.0 png_0.1-7 R.oo_1.23.0 uwot_0.1.8
## [25] sctransform_0.2.1 compiler_3.6.3 httr_1.4.1 assertthat_0.2.1 Matrix_1.2-18 fastmap_1.0.1 lazyeval_0.2.2 later_1.0.0
## [33] htmltools_0.4.0 tools_3.6.3 rsvd_1.0.3 igraph_1.2.5 gtable_0.3.0 glue_1.4.0 RANN_2.6.1 reshape2_1.4.4
## [41] Rcpp_1.0.4.6 Biobase_2.44.0 vctrs_0.2.4 multtest_2.40.0 ape_5.3 nlme_3.1-147 gbRd_0.4-11 lmtest_0.9-37
## [49] xfun_0.13 stringr_1.4.0 globals_0.12.5 mime_0.9 lifecycle_0.2.0 irlba_2.3.3 future_1.17.0 MASS_7.3-51.6
## [57] zoo_1.8-8 scales_1.1.0 promises_1.1.0 parallel_3.6.3 sandwich_2.5-1 RColorBrewer_1.1-2 yaml_2.2.1 reticulate_1.15
## [65] pbapply_1.4-2 gridExtra_2.3 stringi_1.4.6 mutoss_0.1-12 plotrix_3.7-8 BiocGenerics_0.30.0 bibtex_0.4.2.2 Rdpack_0.11-1
## [73] SDMTools_1.1-221.2 rlang_0.4.6 pkgconfig_2.0.3 evaluate_0.14 lattice_0.20-41 ROCR_1.0-11 purrr_0.3.4 labeling_0.3
## [81] htmlwidgets_1.5.1 cowplot_1.0.0 tidyselect_1.0.0 RcppAnnoy_0.0.16 plyr_1.8.6 magrittr_1.5 R6_2.4.1 multcomp_1.4-13
## [89] pillar_1.4.4 withr_2.2.0 sn_1.6-1 fitdistrplus_1.0-14 survival_3.1-12 tibble_3.0.1 future.apply_1.5.0 tsne_0.1-3
## [97] crayon_1.3.4 KernSmooth_2.23-17 grid_3.6.3 data.table_1.12.8 metap_1.3 digest_0.6.25 xtable_1.8-4 tidyr_1.0.3
## [105] httpuv_1.5.2 numDeriv_2016.8-1.1 R.utils_2.9.2 stats4_3.6.3 munsell_0.5.0 viridisLite_0.3.0